Shp2 Deficiency in Kupffer Cells and Hepatocytes Aggravates Hepatocarcinogenesis by Recruiting Non-Kupffer Macrophages

Background & Aims Complex communications between hepatocytes and Kupffer cells (KCs) are known to drive or suppress hepatocarcinogenesis, with controversial data in the literature. In previous experiments that aimed to decipher hepatocyte/KC interactions, we unexpectedly unveiled a tumor-suppressing effect of polyinosinic-polycytidylic acid, a widely used inducer of MX dynamin like GTPase 1 (Mx1)-cre expression, which questioned a theory of interleukin 1a/6 cytokine circuit in hepatocyte/KC communication. The goal of this study was to clarify the controversy and decipher unique functions of KCs and non-KC macrophages in liver tumorigenesis. Methods We used the C-type lectin domain family 4 member F (Clec4f)-cre system to delete Src-homology 2 domain-containing tyrosine phosphatase 2 (Shp2)/protein tyrosine phosphatase nonreceptor 11 (Ptpn11) in KCs, and a combination of Clec4f-cre and adeno-associated virus–cre to delete Shp2 in KCs and hepatocytes to investigate the effects on hepatocellular carcinoma development and immune cell compositions/activities. Results Ablating Shp2 in KCs generated a tumor-promoting niche, which was exacerbated further by concurrent removal of Shp2 in both KCs and hepatocytes. Shp2 deficiency induced KC apoptosis and decreased its numbers, which induced compensatory recruitment of bone marrow–derived monocytes into liver. These newly recruited monocytes differentiated into non-KC macrophages with tumor-associated macrophage function, leading to aggravated tumor progression through down-regulation of CD8 T cells. Tumor-associated macrophage blockade by anti-chemokine (C-C motif) ligand 2 (CCL2) antibody inhibited hepatocellular carcinoma progression, while depletion of all macrophages had a tumor-promoting effect by increasing myeloid-derived suppressor cells (M-MDSCs) and decreasing CD8 T cells. Conclusions Shp2 loss in KCs or hepatocytes generated a protumorigenic microenvironment, which was exacerbated by its removal in both cell types. These results show the complexity of intercellular signaling events in liver tumorigenesis and raises caution on the use of specific Shp2 inhibitor in liver cancer therapy. Transcript profiling: RNA sequencing data are available at Gene Expression Omnibus (GSE222594).

H epatocellular carcinoma (HCC) has become a most deadly malignant disease worldwide. 1 For patients with early stage HCC, local ablation and surgical resection often are applied for curative treatment. 2 However, HCC recurred in more than half of these patients within 2 years, and rapidly progressed into advanced stages. 3 In addition, a significant population of HCC patients initially were diagnosed at advanced stages, owing to a lack of clinical symptoms at early stages. 4 Treatment options for advanced HCC are limited, with liver transplantation remaining a primary choice. 2 In-depth understanding of molecular and cellular mechanisms that drive HCC development will be instrumental for design of targeted therapeutic strategies. Remarkably, several groups have shown that genetic ablation of classic oncoproteins such as inhibitor kappa-B kinaseb (Ikkb), inhibitor kappa-B kinaseb 1/2 (Jnk1/2), epidermal growth factor receptor (EGFR), b-catenin, and protein kinase B (Akt) in hepatocytes exacerbated HCC developed spontaneously or induced by chemical carcinogen diethylnitrosamine (DEN), [5][6][7][8][9] disclosing complex mechanisms of liver tumorigenesis. In contrast, HCC development was suppressed by deletion of Ikkb, Jnk1/2, and EGFR in both hepatocytes and Kupffer cells (KCs), using the Mx1-cre system induced by polyinosinic-polycytidylic acid (polyIC). 6,8,9 These bidirectional effects of signaling molecules led to a proposal that loss of these prosurvival molecules in hepatocytes induced hepatocyte production of interleukin (IL)1a, which stimulated macrophages to produce IL6 that in turn promoted hepatocyte proliferation and transformation, resulting in more severe HCC development. 6 The communication between hepatocytes and KCs via a cytokine circuit of IL1a/IL6 was disrupted by simultaneous removal of the signaling molecules in hepatocytes and macrophages by Mx1-cre.
In previous experiments, we observed that hepatocytespecific deletion of Src-homology 2 domain-containing tyrosine phosphatase 2 (Shp2) aggravated DEN-induced HCC, similar to the effects of Ikkb, Jnk1/2, or EGFR removal from hepatocytes. Nevertheless, by using the MX dynamin like GTPase 1 (Mx1)-cre mouse line to delete Shp2, we surprisingly unveiled a tumor-inhibiting effect of polyIC, the reagent used to induce Mx1-cre expression, independent of Shp2 deletion in hepatocytes and KCs. 10 These results call for reinterpretation of the previous data on HCC suppression observed with the inducible Mx1-cre system for gene deletion. Of note, the Mx1-cre system with polyIC induction still is being used in liver cancer research, 11,12 but the results could be misleading because of the complicated antitumorigenic or protumorigenic effects of the synthetic double-stranded RNA (dsRNA) that induces a milieu of inflammatory cytokines.
In the present study, we used the Clec4f-cre system to delete Shp2/protein tyrosine phosphatase nonreceptor 11 (Ptpn11) in KCs, 13 and combination of Clec4f-cre and adenoassociated virus (AAV)-cre to delete Shp2 in KCs and hepatocytes. We show that selective deletion of Shp2 in KCs downregulated the KC pool and enhanced hepatic recruitment of bone marrow-derived monocytes, which differentiated into non-KC macrophages. Strikingly, Shp2 loss in KCs and/or hepatocytes aggravated primary and metastatic liver tumor progression owing to accumulation of tumor-promoting macrophages and suppression of CD8 T lymphocytes. These results, although challenging the previous theory on hepatocyte-KC communication in driving HCC, also show multifaceted functions of macrophages in the liver, which may guide design of more effective liver cancer therapy.

Shp2 Deletion Downsizes the KC Pool and Promotes Hepatic Recruitment of Bone Marrow-Derived Monocytes
To define a functional role of Shp2 in KCs in the liver, we crossed Shp2 F/F mice with Clec4f-cre þ/transgenic mice to generate a Shp2 F/F :Clec4f-cre þ/-(Shp2 DK ) mouse line, with Shp2/Ptpn11 ablated in KCs ( Figures 1A and 2A). Clec4f is a specific marker for KCs and not expressed in other macrophages in the liver and other organs. 13 Of note, KCs are liver-resident macrophages that constitute nearly 90% of total macrophages in the liver ( Figure 2B). We isolated liver macrophages ( Figure 2C), and immunoblot analysis showed only a modest decrease of Shp2 protein amounts in macrophages of Shp2 DK mice, relative to WT control (Shp2 DK / WT, 68.07%) ( Figure 1B). It was shown previously that depletion of KCs by diphtheria toxin (DT) expression under control of Clec4f induced hepatic recruitment of monocytes, which differentiated first into non-KC macrophages and then new KCs for compensation. 13 Because Shp2 is a positive regulator for cell proliferation, 14 we asked if KC numbers decreased in the Shp2 DK mouse. The percentages of total liver macrophages decreased in Shp2 DK mice ( Figure 2D and E), in which KCs decreased, while monocytes and non-KC macrophages increased (Figures 1C and 2F and G). The fluorescence-activated cell sorter (FACS) data were validated by immunostaining for F4/80 and Clec4f ( Figure 1D). Because of restricted expression of Clec4f in KCs, Shp2 was not deleted in newly recruited non-KC macrophages, which explains the modestly reduced levels of Shp2 in the whole macrophage pool of Shp2 DK mice.
Shp2 deletion by Clec4f-cre promoted KC apoptosis in vivo ( Figure 1E), as assessed by caspase 3/7 expression, and in cell culture, by Annexin-V staining ( Figure 2H). Interestingly, proliferation of both KCs and non-KC macrophages was up-regulated in Shp2 DK mice ( Figure 1F), in agreement with previous data showing higher KC proliferation in the first 2 weeks after DT-mediated KC depletion. 15 We then measured messenger RNA (mRNA) levels of monocyte-associated chemokines and adhesion molecules to explore the underlying mechanisms by RNA-sequencing (RNA-seq) analysis of nonparenchymal cells (NPCs) isolated from WT and Shp2 DK livers ( Figure 1G). The expression of chemokines Ccl2, Ccl3, Ccl7, and adhesion molecule pf4 were significantly higher in NPCs of Shp2 DK than WT liver ( Figure 1H), and increased expression of Ccl2 and Ccl7 was confirmed by quantitative reverse-transcription polymerase chain reaction (PCR) data ( Figure 2I). Moreover, 30.33% of KCs expressed lower levels of Clec4f in Shp2 DK mice, much higher than 8.33% in WT mice, suggesting that these were newly differentiated KCs in Shp2 DK liver ( Figure 1I). Together, these data suggest that Shp2 deficiency induced KC apoptosis and decreased KC numbers, which triggered compensatory monocyte recruitment and non-KC macrophage/KC differentiation and proliferation in the liver. When the newly differentiated KCs started to express Clec4f-cre, it drove Shp2 deletion and then KC apoptosis, constituting a dynamic loop featured by persistent recruitment of monocytes and increased non-KC macrophages, to compensate for the KC deficit.

Shp2 Deficiency in KCs Exacerbates Metastasized Liver Tumor Progression
Given that ablating Shp2 in KCs induced dynamic changes in compositions of the liver macrophage population, we reasoned that it might have a significant impact on the hepatic immune ecosystem and on liver tumorigenesis. To address this issue, we took 2 different approaches to evaluate hepatic responses to tumor growth in Shp2 DK mice. First, we examined metastasized liver tumors after intrasplenic injection of Mouse Colon Cancer Cells 38. 16 When evaluated 16 days later by the numbers and sizes of tumor nodules and also the liver weight/body weight ratios, the tumor burdens were significantly higher in Shp2 DK mice than WT controls ( Figure 3A and B). Then, we compared immune cell compositions between tumorbearing WT and Shp2 DK mice, and detected significantly reduced numbers of KCs, increased non-KC macrophages and M-MDSCs, with a reduction of CD8 T cells ( Figure 3C). The compensatory recruitment of monocytes and the increased proliferation rate apparently contributed to the higher percentages of non-KC macrophages ( Figure 3D). Immunostaining further confirmed that tumor-associated macrophages (TAMs) were non-KC macrophages (F4/80 þ and Clec4f -), a population expanded in Shp2 DK mice ( Figure 3E). TAMs were reported to suppress CD8 T cells by inhibiting their proliferation and secreting extracellular matrix to exclude CD8 T cells from the tumor nest. Thus, we chose to examine TAMs and CD8 T cells in the same fields of liver sections, and found that the increased TAMs correlated well with reduced CD8 T cells in Shp2 DK mice ( Figure 3F).
We also investigated the effect of Shp2 loss in KCs on tumorigenesis in a primary HCC model after hydrodynamic tail vein injection (HTVi) of 2 oncogenes, N-Rat sarcoma virus (N-Ras) and cellular-Myelocytomatosis (c-Myc), together with a sleeping beauty transposase construct, into WT and Shp2 DK mice. 17 Tumor loads were evaluated 6 weeks after oncogene transfection. Interestingly, ablating Shp2 in KCs did not significantly influence the primary tumor growth, as assessed by the numbers and sizes of tumor nodules and the liver weight/body weight ratios ( Figure 3G and H). Taken together, these results suggest that selective deletion of Shp2 in KCs generated a protumorigenic niche in the liver, which was sufficient to aggravate tumor progression from metastasized tumor cells, but was insufficient to promote initiation and development of primary liver cancer driven by the oncogenes Ras and Myc.

Loss of Shp2 in KCs and Hepatocytes Aggravates Primary Liver Cancer Development
We then asked if deleting Shp2 in both KCs and hepatocytes would affect HCC initiation and progression. To address this question, we injected AAV-Cre virus via tail vein into Shp2 F/F and Shp2 DK mice, to generate Shp2 DH and Shp2 DHK mouse lines with Shp2 deleted in hepatocytes and KCs plus hepatocytes, respectively ( Figure 4A). We compared the tumor burdens between Shp2 DH and Shp2 DHK mice after transfection of Ras/Myc oncogenes using the HTVi approach. In agreement with our previous data, 17 Shp2 loss in hepatocytes mediated by AAV-Cre aggravated Ras/Myc-driven tumor loads in Shp2 DH mice, relative to WT and Shp2 DK mice ( Figure 4B and C). However, the tumor burdens were significantly higher in Shp2 DHK mice than in Shp2 DH mice ( Figure 4B and C), suggesting that concurrent removal of Shp2 from both KCs and hepatocytes further promoted HCC progression. Shp2 loss in hepatocytes triggered active recruitment of macrophages into liver by comparing total macrophage numbers among WT, Shp2 DK , Shp2 DH , and Shp2 DHK mice ( Figure 4D). Here, we chose tumors with similar sizes in each group for comparison to exclude the effect of tumor volumes on macrophage recruitment. Thus, Shp2 removal in KCs or hepatocytes generated a protumorigenic microenvironment, which was exacerbated by its concurrent deletion in both cell types. This result stands in contrast to the previous data that deleting prooncogenic molecules in both hepatocytes and KCs were tumorsuppressive. 5 Tumor-Promoting Myeloid Cell Subsets Are Accumulated in Shp2 DHK Mice To investigate mechanisms underlying the tumorpromoting effect in Shp2 DHK mice, we compared immune cell compositions between Shp2 DH and Shp2 DHK mice 3 weeks after transfection of Ras/Myc oncogenes. Although no significant difference was observed in total macrophages ( Figure 5A), we detected down-regulation of the KC subpopulation with increased non-KC macrophages in Shp2 DHK mice, relative to Shp2 DH mice ( Figures 5B and 6A). Immunostaining further confirmed that TAMs were Clec4fnegative, non-KC macrophages, which were expanded in Shp2 DHK liver ( Figure 5C). TAMs are among the most abundant stromal cell types within the tumor microenvironment (TME), which are crucial drivers of tumor progression by creating an immunosuppressive microenvironment. 18 The proliferation rate of non-KC macrophages increased significantly in Shp2 DHK liver, compared with Shp2 DH liver ( Figures 5D and 6B), contributing to the expansion of TAMs. We measured mRNA levels of TAM-related cytokines, and detected significant increase of tumor necrosis factor a, MMP12, and MMP13 in Shp2 DHK mice ( Figure 5E). Matrix metalloproteinases (MMPs) are zinc-dependent proteases and are involved in degradation of extracellular matrix, and represent the most prominent family of proteases associated with tumorigenesis. 19 Although IL6 was viewed previously as a critical messenger between hepatocytes and KCs in driving liver tumorigenesis, 5 we did not detect significant difference in IL6 expression between Shp2 DHK and Shp2 DH livers ( Figure 5E).
Myeloid-derived suppressor cells (MDSCs) and dendritic cells (DCs) are 2 other cell subsets differentiated from monocytes, in association with tumor progression. 20 We observed expansion of both the MDSC and DC pools in Shp2 DHK mice ( Figure 5B), likely contributing to the tumorpromoting effect. MDSCs are characterized by their myeloid origin, immature status, and a remarkable capacity to suppress T-cell responses. 20 CD11b þ DCs were reported to suppress CD8 T cells or promote T helper 2 (Th2) cell responses to establish an immune-suppressive microenvironment. 21,22 CD11b þ DCs increased in Shp2 DHK mice ( Figure 5F), with no significant change observed in CD11b -DCs ( Figure 6C). KCs defined as Clec4f þ CD11b þ F4/80 high macrophages also are featured to highly express CD163, CD206, and major histocompatibility complex (MHC)II. 15,23,24 Relative to KCs, the non-KC macrophages showed much lower expression for the markers CD163 ( Figures 5G and 7A  In search for factors involved in recruiting bone marrow-derived monocytes/macrophages, we isolated NPCs and performed a quantitative reverse-transcription PCR analysis to examine chemokine expression. The mRNA levels of Ccl2, Ccl3, Ccl4, and Ccl7 were significantly higher in Shp2 DHK than in Shp2 DH mice ( Figure 8A), with no significant difference observed for other chemokines between the 2 groups ( Figure 9A). Because Ccl2 is a key chemokine known for macrophage recruitment, 25 we tested its putative role by injecting anti-Ccl2 antibody into Shp2 DHK mice ( Figure 10A). Indeed, administration of Ccl2 antibody suppressed recruitment of non-KC macrophages ( Figure 8B), with no significant impact on KCs, MDSCs, and DCs ( Figure 9B-D). Immunostaining with anti-F4/80 also showed significantly decreased TAMs after Ccl2 neutralization ( Figure 8C), showing its efficiency for TAM blockade, and non-KC macrophages in nontumor areas also decreased after Ccl2 antibody injection ( Figure 10C). Furthermore, Ccl2 neutralization reduced tumor burdens in Shp2 DHK mice ( Figure 8D and E), with no significant effect on tumor growth in Shp2 DK mice ( Figure 10D).
We injected clodronate liposome to deplete all macrophages ( Figures 10B and E and 11A), and examined its impact on tumor growth. Interestingly, in contrast to the effect of Ccl2 antibody, depleting all macrophages by clodronate aggravated HCC development ( Figure 11B and C). FACS analysis showed up-regulation of M-MDSC, reduced numbers of CD8 T cells ( Figure 11D), and decreased CD8 Tcell proliferation ( Figure 11E) after macrophage depletion. These results are consistent with a previous report that depletion of all macrophages by clodronate liposome dramatically increased liver tumorigenesis from xenografted cancer cells. 26 Although the mechanism is not fully understood, depleting macrophages likely enhanced recruitment of monocytes into the liver, similar to DTmediated KC depletion. 13,15,23 In the tumor microenvironment, these newly recruited monocytes differentiated into M-MDSCs, which inhibited proliferation of CD8 T cells. 27 Thus, selective blockade of TAMs recruitment inhibited HCC development, while depleting all macrophages induced a tumor-promoting niche in the liver.

Depleting CD8 T Cells Accelerates and Aggravates Liver Tumorigenesis in Shp2 DHK Mice
FACS analysis showed a decrease of proliferating CD8 T cells in Shp2 DHK mice 3 weeks after Ras/Myc oncogene injection, relative to Shp2 DH mice ( Figures 12A and 13A), and also a significant reduction of infiltrated CD8 T-cell numbers in tumor areas in Shp2 DHK mice ( Figure 12B). Consistent with previous reports that TAMs suppressed CD8 T-cell expansion, 18,28 proliferating CD8 T cells indeed were upregulated by TAM blockade with anti-CCl2 antibody injection ( Figure 12C). These results suggest that increased TAMs inhibited CD8 T-cell proliferation and function in Shp2 DHK liver. To determine a functional role of CD8 T cells in HCC development, we injected CD8 antibody to deplete CD8 T cells ( Figure 12D). Injecting anti-CD8 antibody at D4, 9,14,19, and 24 efficiently suppressed CD8 T cell numbers in the liver ( Figure 13B). Indeed, depletion of CD8 T lymphocytes exacerbated tumorigenesis in Shp2 DHK livers when the tumor phenotype was examined 4 weeks after oncogene transfection ( Figure 12E and F), with no significant effect on tumor growth in Shp2 DK mice ( Figure 13C). Together, these results suggest that up-regulated TAMs promote HCC development in Shp2 DHK mice at least in part through downregulation of CD8 T-cell proliferation and functions.

Discussion
Herein we present data showing that deleting Shp2, a prooncogenic molecule, in KCs and hepatocytes aggravated HCC development in mouse models. It has been recognized that intercellular communications between hepatocytes and NPCs, especially KCs, play complex roles in driving HCC initiation and progression, with the underlying mechanisms to be elucidated. Several groups addressed this issue by generating cell type-specific gene knockout mouse models, using Alb-cre and Mx1-cre transgenic mouse lines to delete target genes in hepatocytes and KCs. 5,6,8,9 Their results showed opposite functions of signaling molecules in hepatocytes and KCs, with regard to HCC development. One striking phenotype is that deleting pro-oncogenic molecules in both KCs and hepatocytes suppressed HCC, using the polyIC-induced Mx1-Cre system. On the contrary, our data presented here indicate that Shp2    removal in KCs and hepatocytes, mediated by Clec4f-Cre and AAV-Cre, drastically promoted HCC development, which challenges a widely known model on hepatocyte/KC communication via a cytokine circuit. 5 We found that deleting Shp2 in KCs generated a liver microenvironment conducive for tumor growth out of metastasized colorectal cancer cells. Of note, our previous experiments showed that Shp2 loss in hepatocytes aggravated HCC development induced by DEN or the oncogenes Ras/Myc. 10,17 In this study, we generated a compound mutant mouse line with Shp2 selectively deleted from both KCs and hepatocytes. Strikingly, concurrent removal of Shp2 from the 2 cell types induced a tumor microenvironment that robustly promoted HCC development driven by the oncogenes Ras/Myc. Altogether, our results show that deleting Shp2 in either KCs or hepatocytes was protumorigenic, while removing Shp2 from both cell types showed an even more robust tumor-promoting effect. These observations are in sharp contrast to previous observations on the tumor-suppressing effects of ablating pro-oncogenic molecules in KCs and hepatocytes, using the Mx1-Cre mouse line. 5 Together with our previous results showing an antitumor effect of polyIC, the inducer of Mx1-Cre expression, we believe that the reported tumorinhibiting effect mainly was owing to the strong immunomodulatory function of polyIC, rather than deletion of these signaling molecules in KCs and hepatocytes. The experimental data clarify a confusing issue and argue against application of the Mx1-Cre system to liver cancer research. It must be indicated that polyIC-driven Mx1-Cre expression mediates a target gene deletion in almost all cell types in the liver, not restricted to hepatocytes, KCs, or stellate cells, which confounds the interpretation of experimental results obtained with this system in liver studies.
Shp2 deficiency led to decreased KC numbers in the liver and therefore triggered compensatory recruitment of bone marrow-derived monocytes into the liver, which then differentiate into non-KC macrophages with TAM function (Figure 14). Compared with KCs, these non-KC macrophages have lower expression of CD163, CD206, MHCII, CD11b, and F4/80, showing a less differentiation phenotype. When the newly generated KCs start to express Clec4f, the cre system is turned on, leading to Shp2 deletion and KC apoptosis. This dynamic loop may cause persistent recruitment of monocytes and increase non-KC macrophages. Consistently, previous studies have shown that DT-mediated depletion of liver-resident KCs generated niche availability and therefore induced engraftment of bone marrow-derived monocytes, which gave rise to selfrenewing and differentiated KCs. 13,15,23 Mechanistically, functional interactions of the notch ligand Delta like canonical notch ligand 4 (DLL4) and transforming growth factor-b secreted by liver sinusoidal endothelial cells (LSECs) with endogenous liver X receptor (LXR) ligands drive the induction and functional maintenance of KCs through up-regulation of recombination signal binding protein for immunoglobulin Kappa J Region (RBPJ) and LXRa and reprogramming of the repopulating macrophage enhancer landscape. 13 We observed a TAM function of these non-KC macrophages by the HCC-inhibiting effect of CCL2 antibody, which effectively suppressed their recruitment into the liver. This is in agreement with previous data that TAMs were monocyte-derived macrophages. KCs are stationary cells located in the vasculature, adherent to LSECs, and exposed directly to the contents of blood. 29 Indeed, combinatorial interactions of LSECs and KCs were required for induction and maintenance of KC identity. 13 Thus, monocytes in tumor tissues differentiated into non-KC TAMs, instead of mature KCs. This study also showed that the expanded population of TAMs was associated with a reduction of CD8 T cells in both primary and metastatic liver tumor models ( Figure 14). Functionally, TAMs in tumor-bearing livers inhibited proliferation of CD8 T cells, thus contributing to the protumorigenic effect in Shp2 DHK liver. It was reported previously that altered amino acid metabolism in TAMs resulted in production of arginase and immunosuppressive metabolites via the indoleamine 2,3-dioxygenase pathway responsible for metabolic starvation in T cells. 18 Macrophages also were shown to modulate CD8 T-cell infiltration by inducing fibrosis. 30 Targeting chemokines or its receptors to block recruitment of TAMs appears to be a promising therapeutic strategy for HCC. 25,28,31 Interestingly, deleting Shp2 in KCs aggravated progression of liver tumors grown from metastasized colorectal cancer cells, but had no significant effect on primary tumors driven by Ras/Myc oncogenes. This could be owing to difference in antigenic properties of the tumor cells, but also may be caused by a more profound impact of the impaired innate immunity on tumor progression than tumor initiation or oncogene-induced cell transformation in Shp2 DK mice. Indeed, dual deletion of Shp2 in KCs and hepatocytes further down-regulated hepatic immune functions, resulting in more severe growth of tumors induced by Ras/Myc oncogenes in Shp2 DHK mice. This is consistent with our previous data showing that Shp2 deficiency in hepatocytes down-regulated macrophage function in clearance of liver tumor-initiating cells driven by the oncogenes in Shp2 DH mice. 17 It is remarkable that depleting all macrophages by injecting clodronate liposomes promoted liver cancer development, opposite to the tumor-suppressing effect of blocking TAM recruitment by anti-CCL2 antibody. These opposing results illustrate vividly the complexity of macrophage composition with multifaceted functions in liver tumorigenesis, which raised caution on manipulating macrophages for oncological treatment. If the antitumorigenic KCs were removed, the newly recruited monocytes in the  liver would differentiate into MDSCs, which can downregulate CD8 T cells and promote liver tumorigenesis. Thus, a promising strategy in liver cancer therapy would be to eliminate TAMs specifically by targeting their unique membrane marker(s) or to block their hepatic recruitment.
Because Shp2 is currently an extremely popular drug target in the pharmaceutical industry for cancer therapy, our study on its effects in various cell types will guide the design of new therapeutic strategies based on targeting Shp2 alone or in combination. We believe that a most effective therapy must rely on cell type-specific delivery of a potent Shp2 inhibitor through nanotechnology or other means.

Mouse Lines and Tumor Models
The animal protocols (S09108) were approved by the Institutional Animal Care and Use Committee of the University of California San Diego, following National Institutes of Health guidelines. The Shp2 DK (Shp2 F/F :Clec4f-Cre þ/-) mouse line in the C57BL/6 background was generated by breeding the Shp2 F/F mouse with Clec4f-Cre þ/transgenic mice. The SHP2 DH and Shp2 DHK mouse lines were generated by giving a single intraperitoneal injection of 2.5 Â 10 11 genome copies of AAV8-thyroxine-bindlng globulin (TBG)-Cre to WT (Shp2 F/F ) and Shp2 DK mouse lines at 4 weeks old, respectively. Mouse HCC was induced by HTVi of oncogenes together with the sleeping beauty transposase, as described. The plasmids (PT/Caggs-N-Ras-V12, PT3-EF1a-C-Myc) were gifts from Dr X. Chen at the University of California San Francisco. A total of 0.95 mg/g N-Ras and 0.05 mg/g c-Myc, together with 0.1 mg/g sleeping beauty transposase were co-transfected. The metastatic liver tumor was induced by intrasplenic injection of 4 Â 10 4 Mouse Colon Cancer Cells 38/mouse at the age of 8-10 weeks; mice were killed 16 days after transplantation.

Isolation of NPCs and Macrophages From Liver
Liver was digested enzymatically with collagenase H (Roche) by in situ perfusion. NPCs were isolated by centrifugation at 50 Â g for 5 minutes and were laid on top of 63% and 27% Percoll buffer. The gradients were centrifuged at 2000 relative centrifugal force (rcf) for 20 minutes at 25ºC using a SW41Ti rotor (Beckman). Macrophages were recovered from the interface between the 2 Percoll gradients, washed and cultured overnight, and then a pure population of macrophages was collected. The purity of the macrophages was determined by immunofluorescence staining and always exceeded 90%.

Histology, Immunohistochemistry, and Immunofluorescent Assay
Liver tissue was fixed in z-Fix solution or embedded in Tissue-Tek O.C.T. Compound (Sakura Finetek) for paraffin and frozen block preparation, respectively. Paraffin sections were stained for F4/80 and CD8. Frozen tissue sections were stained for Clec4f, F4/8, CD8, and Annexin V-fluorescein isothiocyanate apoptosis assay according to the manufacturer's procedures. The images were acquired with an Olympus IX71 microscope and CellSense software.

Biochemical Assays and Reagents
Immunoblotting and quantitative real-time PCR were performed following standard protocols. The total RNA of NPCs was extracted with trizol reagents and reverse-transcribed using a kit. Quantitative real-time PCR was performed with master mix using the Mx3000P qPCR system (Agilent Technologies).

Flow Cytometric Analysis
Single-cell suspensions were stained using the LIVE/ DEAD Fixable Aqua Dead Cell Stain Kit first to exclude dead cells. Surface antigens then were labeled. Next, cells were permeabilized with Fix/Perm solution (Thermo Fisher Scientific) for 30 minutes at room temperature, followed by intracellular staining. Flow cytometry data were analyzed using FlowJo software (FlowJo V10). The related flow cytometry antibody sources are shown in Table 1.

Cell Depletion and Chemokine Neutralization
For macrophage depletion, mice were injected with 200 mL clodronate liposome or 200 mL phosphate-buffered saline control liposome every 3 days. Depletion of CD8 T cells was achieved by intraperitoneal injection of 200 mg antimouse CD8a or 200 mg rat IgG2b as isotype control every 5 days. A total of 200 mg anti-mouse CCL2 was injected intraperitoneally every 3 days for neutralization.

RNA-Seq and Bioinformatic Data Analysis
NPCs were isolated from liver tissues following standard protocols. Total RNAs were extracted from NPCs using the RNeasy Plus Micro Kit (#74034; Qiagen). Libraries for RNAseq were prepared using the Illumina TruSeq v2 Kit following the manufacturer's instructions. Sequencing was performed at the University of California San Diego Genomics Core on the NovaSeq6000 platform. Raw reads generated by RNA-seq experiments were mapped to the GRCm39 mouse reference genome using the Star program (GitHub Inc; 2.7.10a). The expression level of each gene was obtained using featur-eCounts v2.0.3. Differentially expressed genes were selected based on q-values (<0.1) and fold change (!1.5). Volcano plots in figures were generated using the ggplot2 package in R.

Statistical Analysis
Statistical analysis was performed using SPSS software version 23. Values are presented as means ± SD. Statistical significance between the means was calculated by an independent samples t test. Phenotypic comparison between KCs and non-KC macrophages were evaluated by a paired samples t test. A P value <.05 was considered significant.